Single-cell bioinformatics
01Stem Cell Differentiation Pipeline
An end-to-end single-cell RNA-seq workflow that processed 50 GB of raw sequencing data from approximately 120,000 cells in under two hours.
Implemented quality-control and normalization steps that recovered the expected transition from stem cells toward heart-muscle cells across day 0 to day 16 samples.
- R
- Seurat
- Nextflow
- Docker
- Cell Ranger
- Python